I have become disillusioned with this DNA business. Every paper I’ve read seems to contradict another paper … sometimes papers by the same group.
Around 20 years ago I read: Using RAPDs to Study Phylogenetic Relationships in Rosa; Millan, Osuna, Cobos, Torres; Theor. Appl. Genet., 1996, 92:273-277)
Among other odd things, the authors concluded that Rosa cymosa and R. banksiae are as far removed from each other as both are from the rest of the genus.
In the paper by Fougere-Danizan, et al. (2012), we read that Rosa blanda and R. nitida are close cousins (node 64). Similarly, node 75 links R. majalis and R. rugosa.
Should we interpret these report to mean that Blanda and Nitida are recently separated, as are Rugosa and Majalis?
I think it is worth mentioning at this point that Boulenger (1937) had a dickens of a time distinguishing R. blanda and R. cinnamomea (majalis). Cinnamomea usually has paired, infrastipular prickles, but sometimes does not. Blanda usually lacks these prickles, but sometimes has them.
http://bulbnrose.x10.mx/Roses/breeding/Boulenger/BoulengerBlanda1937.html
Did R. cinnamomea somehow sneak across Europe and Asia to reach the New World via the Bering Land Bridge?
Then there is Regel’s (1881) suggestion that R. nitida is the American form of R. rugosa.
It seem to me that the modern DNA folks are making the same mistakes as the neo-mendelists did a century ago. When we distinguish two species, can we really assume that the genes responsible for those distinctions are scattered among all the chromosomes? I don’t think so. And can we assume that the distinctions between two species will also be revealed in whatever structures happen to catch our attention?
For instance, Rosa nitida is stoloniferous. R. blanda is rhizomatous. There are other differences, of course, but can we assume that differences in the the number of glands on the sepals, or the diameter of the stomata will always be linked to the more obvious distinctions?
Joly and Brunneau (2007) wrote, “Morphological characters were selected to be applicable to as many specimens as possible.” No stolons or rhizomes.
Furthermore, the authors saw no reason to distinguish R. woodsii from R. blanda. They cited Erlanson (1934) but ignored her report that Woodsii has 35-85 stamens (av. 65), whereas Blanda has 85-140 (av. 110).
http://bulbnrose.x10.mx/Roses/breeding/Erlanson/ErlansonRevision1934.pdf
If the supposed relationship between Nitida and Blanda is the result of hybridization, rather than fairly recent speciation, where are the hybrid swarms? Or could it be that the traits that allow the species to be distinguished tend to be inherited together through linkage or correlated expression?