A recent graduate thesis (Wu, cited below) gives clues to a few roses having greater genetic diversity than most and which may, then, be useful as breeders.
Dr. Wu studied DNA markers associated with a blackspot resistance gene, RDR1, among a group of 121 rose cultivars. For the most part the cultivars turned out to be nearly indistinguishable from one another (with respect to this particular gene) but a small number did stand apart from the rest (pdf page 56).
The outlayers are:
CANA2 - David Thompson - 'David Thompson' Rose
CANA5 - Jens Munck - 'Jens Munk' Rose
CANA8 - John Davis - 'John Davis' Rose
EU19 - Crown Princess Margareta - 'Crown Princess Margareta ®' Rose
EU79 - Summer Song - 'Summer Song' Rose
EU88 - Wild Edric - 'Wild Edric' Rose
It’s important to note that this does not necessarily mean anything with respect to better or worse blackspot resistance, although it could. Rather, I interpret this as meaning that they are probably less heavily introgressed than the others and so are worth a look for that reason alone.
Wu’s thesis covers more than just the use of DNA markers to differentiate cultivars, which is the second portion of the research. The first part is a complex analysis of inheritance mechanisms in tetraploid roses. A discussion on pdf pages 13-15 introduces the concepts of autopolyploidy and allopolyploidy in the context of disomic vs tetrasomic inheritance. The key idea for us is that certain re-assortments of chromosomes during meiosis can lead to the phenomenon of double-reduction. This is the way that a unique gene on a single chromosome gets to become present (with luck) on all four sets of chromosomes (say, four times the color or scent, or across-the-board recessives for remontancy).
The thesis is:
Chromosome segregation analysis for disomic and tetrasomic inheritance in K5 tetraploid rose population
by Enjun Xu,
Department of Plant Breeding
Wageningen University
September 2010